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How Governance Policies Impact Form 990 Compliance

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BY Scott Turner
March 4

How Governance Policies Impact Form 990 Compliance

Introduction

For nonprofits, strong governance is crucial for ethical leadership and tax compliance. The IRS Form 990 serves as a public document that provides transparency into an organization’s financial health, mission, and governance structure. Nonprofits with robust governance policies ensure regulatory compliance and build trust with donors and stakeholders.

This article explores how governance policies impact Form 990 compliance, the key policies nonprofits must address, and best practices—including automation—to streamline compliance efforts.

Key Policies Nonprofits Must Address

The IRS requires nonprofits to disclose governance policies on Form 990, reinforcing accountability and transparency. Below are essential policies every nonprofit should have in place:

Conflict of Interest Policy

A well-documented conflict of interest policy ensures that board members and key executives act in the organization’s best interest. Nonprofits must disclose whether they have such a policy and how conflicts are managed. Form 990 asks whether the board regularly monitors and enforces this policy, underscoring its importance. According to the Urban Institute, 98% of nonprofits reported having a conflict of interest policy in place.

Whistleblower and Document Retention Policies

A whistleblower policy protects individuals who report unethical behavior, fostering a culture of integrity. A document retention policy outlines how records are maintained and destroyed, helping nonprofits comply with legal and financial reporting requirements. Both policies contribute to operational transparency and are reviewed on Form 990. The same Urban Institute study found that 74% of nonprofits had a whistleblower policy, and 76% had a document retention policy.

Executive Compensation Reporting

Nonprofits must justify executive compensation as reasonable and necessary to prevent excessive salaries that could trigger IRS scrutiny. Form 990 requires disclosure of the compensation-setting process, including independent reviews and benchmarking data. Strong governance in this area ensures compliance while maintaining donor confidence. The IRS has emphasized that unreasonable compensation can jeopardize an organization’s tax-exempt status.

Best Practices for Ensuring Form 990 Compliance

To avoid compliance risks and strengthen governance, nonprofits should implement these best practices:

Board Oversight and Policy Documentation

Regular board meetings, documented decision-making, and consistent policy enforcement demonstrate strong governance. The IRS scrutinizes whether an organization’s policies are actively followed, making thorough documentation essential for Form 990 reporting. As noted by the Council of Nonprofits, “Good governance starts with a well-functioning board of directors.”

Using automated Not-For-Profit tax compliance software 

Describing the organizations policies on Form 990 is a critical task and often requires significant communication between the persons writing the policies and the tax preparers compiling those narratives into a digestible format for presentation on Form 990. Often when using an external accounting firm, this can lead to significant back and forth and wording is carefully chosen to present the organization in the best light. Because of this tremendous amount of editing and polishing, errors can often appears where least expected. Automating these processes with tools like K1x’s 990 Tracker helps nonprofits centralize governance documentation, monitor compliance requirements, and streamline reporting for Form 990. With real-time tracking and automated alerts, nonprofits can ensure their policies are presented exactly as intended and audit-ready, reducing the risk of IRS penalties.

Conclusion

Governance policies play a vital role in Form 990 compliance, affecting how nonprofits are perceived by regulators, donors, and the public. By implementing strong governance frameworks, ensuring board oversight, and leveraging automation tools like K1x’s 990 Tracker, nonprofits can stay compliant, transparent, and trustworthy. Investing in governance today leads to sustained organizational integrity and donor confidence in the long run.

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